If you have just infected by some worm or mallware, probably your windows cannot display hidden folders and files although you already set the hidden files options from explorer.
Copy paste the following text to notepad, and save it (for example: repair.reg), then double click to make changes to windows registry.
Windows Registry Editor Version 5.00
[HKEY_LOCAL_MACHINE\SOFTWARE\Microsoft\Windows\CurrentVersion\Explorer\Advanced\Folder\Hidden]
"Text"="@shell32.dll,-30499"
"Type"="group"
"Bitmap"=hex(2):25,00,53,00,79,00,73,00,74,00,65,00,6d,00,52,00,6f,00,6f,00,74,\
00,25,00,5c,00,73,00,79,00,73,00,74,00,65,00,6d,00,33,00,32,00,5c,00,53,00,\
48,00,45,00,4c,00,4c,00,33,00,32,00,2e,00,64,00,6c,00,6c,00,2c,00,34,00,00,\
00
"HelpID"="shell.hlp#51131"
[HKEY_LOCAL_MACHINE\SOFTWARE\Microsoft\Windows\CurrentVersion\Explorer\Advanced\Folder\Hidden\NOHIDDEN]
"RegPath"="Software\\Microsoft\\Windows\\CurrentVersion\\Explorer\\Advanced"
"Text"="@shell32.dll,-30501"
"Type"="radio"
"CheckedValue"=dword:00000002
"ValueName"="Hidden"
"DefaultValue"=dword:00000002
"HKeyRoot"=dword:80000001
"HelpID"="shell.hlp#51104"
[HKEY_LOCAL_MACHINE\SOFTWARE\Microsoft\Windows\CurrentVersion\Explorer\Advanced\Folder\Hidden\SHOWALL]
"RegPath"="Software\\Microsoft\\Windows\\CurrentVersion\\Explorer\\Advanced"
"Text"="@shell32.dll,-30500"
"Type"="radio"
"ValueName"="Hidden"
"DefaultValue"=dword:00000002
"HKeyRoot"=dword:80000001
"HelpID"="shell.hlp#51105"
"CheckedValue"=dword:00000001
That's all :)